Software

PopGenome

PopGenome provides data analysis in population genetics and is programmed in R. The software is available from the PopGenome homepage.

phyloCOP

Greedy Phylogeny-Based Algorithm for Orthology Assignment. The software is available from the phyloCOP homepage.

SyBiL

The R-package SyBiL is a Systems Biology Library for R, implementing algorithms for constraint based analyses of metabolic networks. The software is available from the SyBiL homepage.

The R-packages glpkAPI, cplexAPI and clpAPI provide interfaces to the C-API of GLPK, IBM® ILOG® CPLEX® and COIN-OR Clp. The software is available from CRAN.

TreeSnatcher Plus

is a GUI-driven Java application that recognizes bifurcating and multifurcating trees in pixel images (like JPG) and outputs the tree in Newick format. The software is available at the TreeSnatcher Plus homepage.